Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890758.1_cds_XP_016445467.1_40424
CDS Infomation

[gene=LOC107770643] [db_xref=GeneID:107770643] [protein=U-box domain-containing protein 5-like] [protein_id=XP_016445467.1] [location=complement(join(43514..44252,44943..46069,46515..46622,46765..46941,47581..47637))] [gbkey=CDS]
Sequence

ATGGGGATTGATGTTGCTGAAGTAAGTGAGACACCGCCGTCTCATCATGCTATTAAGGTG
CATCGTCTAATGTGCATGGAACTAATTCAGTTAGTAAGTAGAGTTTCGATATTACTTCCT
GAAATTGAAGCAGCCCGTCCTCGATGCTTAGAGGCCCTTAGCCTGTTGAACACTGAAATT
TTCAAAACCAAGACACTGATTCAGCACTGCAGTGAATCTAGTAAGCTATACTTGGCACTA
ACAGGAGCTGTCATACTTTCACGATGTGATAGATCAAGAAACTTGCTTAAGCAAAGCTTA
GGCCAAGTGCAAAATATGGTTCCAGTATCGTTGGCTTCAGAGATTTCGCGACTGATTGCT
GAACTGAAGGGTGCGATATTCAGCTTGGATCCATCTGAAGAGGAGGCAGGGAAGGTTGTG
ATGGAATTACTTCATCAGTATGTGACAACAGATTCAGCGGAAGAACATGCCTTTGAGGCA
ACTCAAGTTGCTATGCGGAGGCTTCATATCACATCTCTACTGACTCTTTTAATAGAGAAA
AGATCCATAAAAAGGATGCTGGGTAGAGTTGGGGACGGTGAGAAAAGGAAAATCTTATTG
CTTTTTTTGAATATCCTCAGTAAGCATGGAAAATCAGTTGTGACACAGCAAACAGAGAGC
GGCTCTCTGCAGCGGGAAGACTTTTACCTGTATGCAAATCAATGTGAAGCAAAATCTCGT
ATGAGATGTCGATCTGACGATGCTCAAGTGGACATACTGAGGAGCTCTCGACCACCGGAT
GAGTTTAAATGTCCTTTGTCTTTGAGAATAATGCACGATCCTGTCGTAATTGCCTCTGGA
CAAACATATGACAGATTTTGGATTCAGAAATGGTTTGCTGAAGGTCACGATACATGTCCA
ATGAATAAAAGGAATTTGGCCCACTTGTCTTTGACCCCGAATTACACAATGAAGGACCTA
ATATCAGGGTGGAGTGCAACACATGGAGTCAGTGTTCCTGACCCGAGCATGGAGGCGGCA
GCGGCTCACTCATTTAAATCTTCTTTGAATTCAATTGCTAGCTTGAGCAGCTCAGTGAAT
GATTTACGTCTTCCTATAGAATTCAGCAATTTATCTTGTGGATTGCCAGATGCTGGTCTT
GTGTCTGTTGCTAAGACACCAAATGACTTCGATGTGGTTTCAGGGGAAAGCAATGGCAGT
ATTCACAAAATTCAATCTGGTATAAGCATTCAAGATATGGACCTGAATCTCTTAACCGGG
TTCAGTTCACTTTCTTGGGAGTCACAATGCATCTTGGTTGGAGATATTAGTAACTTTTTC
AAACATAACGATCAAGCTTGCAATTGGATGTCATCCGAGGATTTTGTTCTAACAATGGTT
AGATTTTTGAAAGATGCACATGATTTCAATGATCTAAATGCACAAATAATGGGATGTCTA
ACATTGACAACAGTTTTGCAGAAATGCAGGAGCAATTTTCCAGATTTGAATGACGATGCT
TTTGCACTTTTGGTATCATTTCTTGAAACTGAGGTTTCTAAAGAAGCCCTTGCCGTATTA
AAAGTATTGTCCTGCCACCAATATTGTCCACAAAAAATTGTGGCTTCTGGTGCTCTGACT
CCCATTCTAGAGATGCTTGATGCCCAGAATGCAGAATTGAATGAAACAGCCATCAAAATA
TTACGTAGTTTGTCTGAAAATAGCAGAATTGTTTCCTTGATTACACCTTCAGAATTCATT
CCCAAGTTGATTCCTTTTCTAGAAGATACAGCTCTAGCAAGCGACACTCTTGTCATTCTG
AAAAAATTGTGCATCACTGAAGATGCTACGACTTCTGTAGCTGAAGCCGATGGATGCATT
GCTTCAGTTGTGAAACTACTCGACAGTGAGAATCGTGAGGATCAGGAGCATGCAGTGGCT
CTTCTTCTTTCTTTGTGTTCTCAATGCTTTCAATACTGTCGGCTGGCCATGGATGAAGGG
ATCATCCTTGATCTTTTCAACATATCTGTCAACGGGAATAGCAGAGGAAAGACAATGGCT
TTGAAGCTACTGACACTGTTGAGAGGTGAATTTAGTAATAATGAAGAATCTTCAGGTGCG
GATGTTGACATTTCTAGAGGCTCTACCATTAACCTTACACTGCAGAAATCTAGTTCAAAG
GCACCTGGATTTTTAAAGAAGTTATTCTCAAAACAATGCCGCGCATAG

Peptide Sequence

PEP ID

XP_016445467.1
PEP Infomation

PREDICTED: U-box domain-containing protein 5-like [Nicotiana tabacum]
Sequence

MGIDVAEVSETPPSHHAIKVHRLMCMELIQLVSRVSILLPEIEAARPRCLEALSLLNTEI
FKTKTLIQHCSESSKLYLALTGAVILSRCDRSRNLLKQSLGQVQNMVPVSLASEISRLIA
ELKGAIFSLDPSEEEAGKVVMELLHQYVTTDSAEEHAFEATQVAMRRLHITSLLTLLIEK
RSIKRMLGRVGDGEKRKILLLFLNILSKHGKSVVTQQTESGSLQREDFYLYANQCEAKSR
MRCRSDDAQVDILRSSRPPDEFKCPLSLRIMHDPVVIASGQTYDRFWIQKWFAEGHDTCP
MNKRNLAHLSLTPNYTMKDLISGWSATHGVSVPDPSMEAAAAHSFKSSLNSIASLSSSVN
DLRLPIEFSNLSCGLPDAGLVSVAKTPNDFDVVSGESNGSIHKIQSGISIQDMDLNLLTG
FSSLSWESQCILVGDISNFFKHNDQACNWMSSEDFVLTMVRFLKDAHDFNDLNAQIMGCL
TLTTVLQKCRSNFPDLNDDAFALLVSFLETEVSKEALAVLKVLSCHQYCPQKIVASGALT
PILEMLDAQNAELNETAIKILRSLSENSRIVSLITPSEFIPKLIPFLEDTALASDTLVIL
KKLCITEDATTSVAEADGCIASVVKLLDSENREDQEHAVALLLSLCSQCFQYCRLAMDEG
IILDLFNISVNGNSRGKTMALKLLTLLRGEFSNNEESSGADVDISRGSTINLTLQKSSSK
APGFLKKLFSKQCRA

Transcript Sequence

Gene sequence data has not been registered.